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Intron Name: Anas_platyrhynchos_platyrhynchos_28_4197217_4198045_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

4197217 - 4198045

Intron Length:

829

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GCA|GTAAGTACG

5'SS Class:

major

3'SS Sequence:

AATTGTTTGTCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GAGTAAA

U12 Branch Point Sequence:

TAAAGCAGAAAT

Flanking Amino Acid:

PLNHNMRFYAALPGQQHCYF

Intron Amino Acid Position:

317

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

76.1

0.62

69.4

41.2

Major BPS

49.8

-0

1.3

53.6

40.4

Major PPT

71.4

0.48

1.1

Minor 5ss

38.2

-1.3

2.7

49.6

40.1

Minor BPS

41.1

-0.5

2.1

58.85

42.9

Associated Gene:

Gene:

MED1

Ensembl Gene ID:

ENSAPLG00000030415

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000038535

4191975 - 4205431

13457