Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_4198248_4198438_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

4198248 - 4198438

Intron Length:

191

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGGGTACG

5'SS Class:

strong_major

3'SS Sequence:

CCATGTCTTTCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTCCCAT

U12 Branch Point Sequence:

TGTTCCCTAATG

Flanking Amino Acid:

SCVKRTVLKEDSPGILQFEV

Intron Amino Acid Position:

384

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.4

0.74

71.4

40.3

Major BPS

72.3

0.55

1.2

80.7

33.2

Major PPT

76.6

0.6

0.9

72.8

37.3

Minor 5ss

29.2

-2.4

2.8

33.6

41.8

Minor BPS

67.5

0.41

1.7

73.17

39.3

Associated Gene:

Gene:

MED1

Ensembl Gene ID:

ENSAPLG00000030415

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000038535

4191975 - 4205431

13457