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Intron Name: Anas_platyrhynchos_platyrhynchos_28_4198535_4198640_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

4198535 - 4198640

Intron Length:

106

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GTG|GTAAGTGGA

5'SS Class:

strong_major

3'SS Sequence:

TTCTCTCTTTCAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTTAT

U12 Branch Point Sequence:

TCTCTTCTAAAT

Flanking Amino Acid:

QHPVNDSLVCVVMDVQDSSH

Intron Amino Acid Position:

416

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.9

0.87

0.9

74.2

36.5

Major BPS

96.5

1.15

0.6

34.2

Major PPT

0.9

0.6

88.4

21.2

Minor 5ss

32.2

-2

3.1

37.6

42.2

Minor BPS

50.1

0.08

1.7

70.81

40.1

Associated Gene:

Gene:

MED1

Ensembl Gene ID:

ENSAPLG00000030415

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000038535

4191975 - 4205431

13457