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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_4198747_4200128_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4198747 - 4200128
Intron Length:
1382

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCTGG
5'SS Class:
strong_major
3'SS Sequence:
TTGTGTCTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTAAA
U12 Branch Point Sequence:
GCATGCTAAACC
Flanking Amino Acid:
TDDFIAKVVQRCMSIPVTMR
Intron Amino Acid Position:
451

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.3
0.88
0.9
69.7
43.7
Major BPS
70.1
0.5
1.1
69.9
35.3
Major PPT
83
0.74
0.9
77.3
37
Minor 5ss
43.2
-0.7
2.9
55.9
48.3
Minor BPS
49
-0
2.1
59.6
45.3

Associated Gene:

Gene:
MED1
Ensembl Gene ID:
ENSAPLG00000030415
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038535
4191975 - 4205431
13457