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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_4228335_4230641_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4228335 - 4230641
Intron Length:
2307

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATAATTA
5'SS Class:
major
3'SS Sequence:
CTGTCTCCAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTCTGCTGGATT
Flanking Amino Acid:
DLFDFQRDIEGRVVENISKR
Intron Amino Acid Position:
76

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.8
0.61
1
72.8
32.3
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
71.2
0.48
0.9
66.3
34.5
Minor 5ss
47
-0.3
2.9
64.6
46.8
Minor BPS
53.2
0.18
2
75.41
41.9

Associated Gene:

Gene:
FBXL20
Ensembl Gene ID:
ENSAPLG00000013411
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013983
4221027 - 4241181
20155