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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_4231244_4231436_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4231244 - 4231436
Intron Length:
193

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGC|GTGAGTAAT
5'SS Class:
major
3'SS Sequence:
TGTTCTCTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTCAT
U12 Branch Point Sequence:
CATGTCAGAATC
Flanking Amino Acid:
NLNGCTKITDATCTSLSKFC
Intron Amino Acid Position:
130

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.1
0.43
1.3
74
38.4
Major BPS
82.6
0.81
0.9
83.3
27.7
Major PPT
85.7
0.8
0.8
77.4
36.9
Minor 5ss
32.9
-2
2.8
37.8
40.1
Minor BPS
45
-0.4
1.7
52.65
39

Associated Gene:

Gene:
FBXL20
Ensembl Gene ID:
ENSAPLG00000013411
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013983
4221027 - 4241181
20155