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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_4231533_4232824_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4231533 - 4232824
Intron Length:
1292

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGAGTT
5'SS Class:
strong_major
3'SS Sequence:
TTCGCCTCCCAAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CAAAAAA
U12 Branch Point Sequence:
GCTGCCACACGC
Flanking Amino Acid:
SITNMSLKALSEGCPLLEQL
Intron Amino Acid Position:
162

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.6
0.79
1
78.9
35.3
Major BPS
46.5
-0.2
1
49.3
29.7
Major PPT
62.6
0.28
1
60.1
35.8
Minor 5ss
35
-1.7
3.8
55.2
49
Minor BPS
36.7
-1
2.1
43.78
43.8

Associated Gene:

Gene:
FBXL20
Ensembl Gene ID:
ENSAPLG00000013411
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013983
4221027 - 4241181
20155