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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_4235032_4235870_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4235032 - 4235870
Intron Length:
839

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTA|GTAAGTAAA
5'SS Class:
major
3'SS Sequence:
GTCTCTCTCGTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTGTGAT
U12 Branch Point Sequence:
CGGCCTGTGATG
Flanking Amino Acid:
LVTLNLQTCLQITDDGLITI
Intron Amino Acid Position:
230

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1
78.7
29.8
Major BPS
68.9
0.47
1.2
60.7
45.9
Major PPT
74
0.54
0.8
69.3
31.3
Minor 5ss
36.9
-1.5
2.7
44
38.6
Minor BPS
41.5
-0.8
1.9
39.52
38.9

Associated Gene:

Gene:
FBXL20
Ensembl Gene ID:
ENSAPLG00000013411
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013983
4221027 - 4241181
20155