Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_4237176_4237701_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

4237176 - 4237701

Intron Length:

526

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AGG|GTAAGTGTT

5'SS Class:

strong_major

3'SS Sequence:

TGCTTGTTCCCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTGCAC

U12 Branch Point Sequence:

TTGCACTGAGTT

Flanking Amino Acid:

TDVGFTTLARNCHELEKMDL

Intron Amino Acid Position:

294

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

88.8

0.91

0.9

85.2

32.2

Major BPS

65.1

0.38

1.4

77.4

37.4

Major PPT

76.7

0.6

0.9

68.4

42.1

Minor 5ss

38.2

-1.3

3.4

49.9

46.4

Minor BPS

47.5

-0.1

1.8

67.71

42.9

Associated Gene:

Gene:

FBXL20

Ensembl Gene ID:

ENSAPLG00000013411

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000013983

4221027 - 4241181

20155