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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_4237747_4239073_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4237747 - 4239073
Intron Length:
1327

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGAGGT
5'SS Class:
strong_major
3'SS Sequence:
TTCTCTTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACCTGAA
U12 Branch Point Sequence:
CCGACCTGAAAA
Flanking Amino Acid:
EKMDLEECVQITDSTLIQLS
Intron Amino Acid Position:
309

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.9
0.73
1
69.9
41.1
Major BPS
60.8
0.27
1
51.3
35.5
Major PPT
90.9
0.92
0.6
84.1
30.9
Minor 5ss
30.8
-2.2
3.7
47.1
48.3
Minor BPS
48.9
-0
1.7
54.19
44

Associated Gene:

Gene:
FBXL20
Ensembl Gene ID:
ENSAPLG00000013411
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013983
4221027 - 4241181
20155