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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_4273670_4273854_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4273670 - 4273854
Intron Length:
185

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGAGGC
5'SS Class:
strong_major
3'SS Sequence:
CTCCCCCCTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GCTCCAT
U12 Branch Point Sequence:
GCTCCATCGAGC
Flanking Amino Acid:
TGRIVFGYKEIPVPVLQISA
Intron Amino Acid Position:
172

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85
0.83
0.9
69.4
35.7
Major BPS
48.8
-0
1.5
60.4
45.8
Major PPT
76
0.59
0.7
69.2
24.6
Minor 5ss
25.3
-2.8
3.2
32.7
42.3
Minor BPS
41.8
-0.6
2
49.69
40.5

Associated Gene:

Gene:
PLXDC1
Ensembl Gene ID:
ENSAPLG00000023980
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032246
4272404 - 4282296
9893