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Intron Name: Anas_platyrhynchos_platyrhynchos_28_4277348_4278174_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

4277348 - 4278174

Intron Length:

827

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAGGCTC

5'SS Class:

strong_major

3'SS Sequence:

GTTTCCCTTTCAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTCTAG

U12 Branch Point Sequence:

GGATTTCTAGGG

Flanking Amino Acid:

EWLSYGCGQQSDEKSCEDLA

Intron Amino Acid Position:

285

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

89.5

0.93

0.9

76.9

38.6

Major BPS

49.9

-0

1.7

58.5

47.9

Major PPT

84.9

0.78

0.8

81.6

30.4

Minor 5ss

35.3

-1.7

3.4

50.1

46.5

Minor BPS

38.2

-1

1.9

37.89

38.5

Associated Gene:

Gene:

PLXDC1

Ensembl Gene ID:

ENSAPLG00000023980

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000032246

4272404 - 4282296

9893