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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_4278311_4279970_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4278311 - 4279970
Intron Length:
1660

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACGGGGT
5'SS Class:
major
3'SS Sequence:
TGCTTTCTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTGAT
U12 Branch Point Sequence:
GGCTCCTGATGT
Flanking Amino Acid:
SLFVDGLTTEDDTKLNQYAG
Intron Amino Acid Position:
330

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
68
43.2
Major BPS
78.8
0.71
1
67.6
40.6
Major PPT
85.7
0.8
0.8
80.6
31.5
Minor 5ss
29.9
-2.3
3.8
46.9
48.5
Minor BPS
46.6
-0.1
2
62.38
47

Associated Gene:

Gene:
PLXDC1
Ensembl Gene ID:
ENSAPLG00000023980
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032246
4272404 - 4282296
9893