About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_4280007_4280144_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4280007 - 4280144
Intron Length:
138

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGCCC
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTCTCAG
U12 Branch Point Sequence:
GGTCCCAGACCC
Flanking Amino Acid:
TKLNQYAGSEGVGSSLPAKA
Intron Amino Acid Position:
342

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.6
0.89
0.9
71.3
37.2
Major BPS
53.2
0.08
1.7
65.3
43.7
Major PPT
95.4
1.02
0.5
91.9
18.9
Minor 5ss
32
-2.1
3.3
42.6
44.4
Minor BPS
44.3
-0.4
1.9
56.02
41.2

Associated Gene:

Gene:
PLXDC1
Ensembl Gene ID:
ENSAPLG00000023980
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032246
4272404 - 4282296
9893