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Intron Name: Anas_platyrhynchos_platyrhynchos_28_4280306_4281176_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

4280306 - 4281176

Intron Length:

871

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTGAGCAGA

5'SS Class:

strong_major

3'SS Sequence:

TCTCTGCCCACAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TCCTGAC

U12 Branch Point Sequence:

TCTCTGCCCACA

Flanking Amino Acid:

TSNAALFFIERRPHRWPAMK

Intron Amino Acid Position:

396

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

85.3

0.83

0.9

74.1

38.4

Major BPS

68.9

0.47

59.2

39.1

Major PPT

0.56

0.8

68.4

Minor 5ss

33.3

-1.9

2.8

45.7

Minor BPS

34.7

-1.2

2.5

48.95

41.9

Associated Gene:

Gene:

PLXDC1

Ensembl Gene ID:

ENSAPLG00000023980

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000032246

4272404 - 4282296

9893