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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_4296315_4296776_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4296315 - 4296776
Intron Length:
462

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGAATA
5'SS Class:
strong_major
3'SS Sequence:
TTTGCTTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
TTTACATGCATA
Flanking Amino Acid:
IFQMLLNYLSVKDISMLCMV
Intron Amino Acid Position:
61

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.8
0.94
0.7
85.9
23.8
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
90.2
0.9
0.7
88.4
28.7
Minor 5ss
31.6
-2.1
3
39.7
45.8
Minor BPS
46.4
-0.2
2.1
66.41
39.8

Associated Gene:

Gene:
FBXO47
Ensembl Gene ID:
ENSAPLG00000010308
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010736
4293128 - 4305670
12543