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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_4303391_4304012_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4303391 - 4304012
Intron Length:
622

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGTGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTATTGCAAAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTCTCTCTATTT
Flanking Amino Acid:
DVISLVDELSVVPREWLMEN
Intron Amino Acid Position:
314

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.8
0.87
0.8
85.7
25.6
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
68.6
0.42
1.1
70.7
38.8
Minor 5ss
46.8
-0.3
2.7
66.4
45.1
Minor BPS
53.7
0.2
1.9
75.99
41.5

Associated Gene:

Gene:
FBXO47
Ensembl Gene ID:
ENSAPLG00000010308
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010736
4293128 - 4305670
12543