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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_4314070_4316106_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4314070 - 4316106
Intron Length:
2037

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAC|GTGAGTAGC
5'SS Class:
major
3'SS Sequence:
TCCACCCCTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTGAC
U12 Branch Point Sequence:
GCGCTCTGACCT
Flanking Amino Acid:
IKKTQDQISNIKYHEEFERS
Intron Amino Acid Position:
104

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.7
0.58
1.3
72.2
39.5
Major BPS
69.1
0.47
1
60.7
37.6
Major PPT
73
0.52
0.8
65.7
30.1
Minor 5ss
32
-2.1
2.7
36
33.5
Minor BPS
46.3
-0.2
1.7
58.42
44.4

Associated Gene:

Gene:
LASP1
Ensembl Gene ID:
ENSAPLG00000010569
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010999
4313160 - 4322886
9727