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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_4316215_4322594_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4316215 - 4322594
Intron Length:
6380

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCGCG
5'SS Class:
strong_major
3'SS Sequence:
CCATTCCGCCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTCCAT
U12 Branch Point Sequence:
TTTTTCTCCATT
Flanking Amino Acid:
LKQQSELQSQIRYKEEFEKN
Intron Amino Acid Position:
68

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
65.8
40.2
Major BPS
64.7
0.37
1.3
74.7
40
Major PPT
65.8
0.36
1
57.5
38.4
Minor 5ss
31.2
-2.1
3.2
38.5
46.7
Minor BPS
59.2
0.37
2
83.48
38.1

Associated Gene:

Gene:
LASP1
Ensembl Gene ID:
ENSAPLG00000010569
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010999
4313160 - 4322886
9727