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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_4322680_4322770_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
4322680 - 4322770
Intron Length:
91

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTCGGGGGG
5'SS Class:
weak_major
3'SS Sequence:
TTTCCCTCCCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTAAC
U12 Branch Point Sequence:
TCTGCTTTAACG
Flanking Amino Acid:
WPWPRVGALVGHYPKQSFTM
Intron Amino Acid Position:
39

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
52.5
0.06
1.4
44.6
40.4
Major BPS
77.3
0.68
1
79.3
29.4
Major PPT
81.2
0.7
0.7
73.5
31.5
Minor 5ss
22.2
-3.2
3.3
20.1
37.8
Minor BPS
70.9
0.52
1.5
70.57
43.2

Associated Gene:

Gene:
LASP1
Ensembl Gene ID:
ENSAPLG00000010569
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010999
4313160 - 4322886
9727