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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_4334214_4335158_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4334214 - 4335158
Intron Length:
945

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGAGTGTG
5'SS Class:
strong_major
3'SS Sequence:
TTTCCCTCTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTCAG
U12 Branch Point Sequence:
GGGTCCTGAGTT
Flanking Amino Acid:
KKGKPELRKKVHPAVVIRQR
Intron Amino Acid Position:
76

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.76
1
72.2
39.5
Major BPS
55.8
0.14
1.6
65.3
43.7
Major PPT
86.5
0.82
0.7
81.3
23.7
Minor 5ss
30.4
-2.2
3.2
31.9
42.5
Minor BPS
51.6
0.13
1.7
66.75
43.8

Associated Gene:

Gene:
RPL23
Ensembl Gene ID:
ENSAPLG00000010740
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011180
4333478 - 4347526
14049