About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_4444906_4445089_R


Intron Information:

Intron Rank:
12

Intron Class:
major

Intron Phase:
1

Intron Coordinates:
4444906 - 4445089

Intron Length:
184

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
TCA|GTAAGTATA

5'SS Class:
major

3'SS Sequence:
TTTTCCTTTACAG|G

3'SS Class:
strong_PPT

U2 Branch Point Sequence:
AAATAAC

U12 Branch Point Sequence:
TTTTCCTTTACA

Flanking Amino Acid:
QGYGKMLIDFSYLLSKVEEK

Intron Amino Acid Position:
494

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
79.5
0.7
1
81.2
32.7

Major BPS
61.3
0.28
1
62
30.6

Major PPT
92.9
0.96
0.6
87.9
22.2

Minor 5ss
41.5
-0.9
2.8
57
41.2

Minor BPS
83.6
1.05
1.4
91.85
28.4

Associated Gene:

Gene:
KAT7

Ensembl Gene ID:

Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

4425670 - 4453386
27717

4441999 - 4453386
11388