Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_4472694_4475000_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

4472694 - 4475000

Intron Length:

2307

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTATGACTG

5'SS Class:

strong_major

3'SS Sequence:

CTCCTCGCTTCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTCTCAG

U12 Branch Point Sequence:

TTGTTCTCAGCA

Flanking Amino Acid:

ASCMNDKATQTPVSWHDAEV

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.7

0.75

68.1

42.8

Major BPS

0.52

1.5

79.6

35.6

Major PPT

0.59

0.8

72.7

32.1

Minor 5ss

41.7

-0.9

3.1

48.1

Minor BPS

57.4

0.23

1.8

71.22

41.1

Associated Gene:

Gene:

FAM117A

Ensembl Gene ID:

ENSAPLG00000006920

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000007186

4472301 - 4478839

6539

ENSAPLT00000042272

4463075 - 4478839

15765