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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_4484513_4484820_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4484513 - 4484820
Intron Length:
308

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
CTTCTTTCCTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTCAT
U12 Branch Point Sequence:
CTCTGCTCATCT
Flanking Amino Acid:
HIFGYGELLLLLSLTLDGLT
Intron Amino Acid Position:
23

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.4
0.81
0.9
76.7
31.8
Major BPS
79.7
0.74
1
79.6
35.6
Major PPT
85.2
0.79
0.7
84.2
23.7
Minor 5ss
30
-2.3
3.2
38.4
40.8
Minor BPS
46.9
-0.1
2.2
67.57
48.9

Associated Gene:

Gene:
SLC35B1
Ensembl Gene ID:
ENSAPLG00000020918
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022303
4484444 - 4487224
2781