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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_4484948_4485311_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4484948 - 4485311
Intron Length:
364

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGGAAC
5'SS Class:
major
3'SS Sequence:
ATCTTCCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TTCTTCTCATCT
Flanking Amino Acid:
NLWSTLFLGAGILFTGELWE
Intron Amino Acid Position:
65

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.9
0.68
0.9
70.9
34.5
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
83.4
0.75
0.8
77.5
30.5
Minor 5ss
27.3
-2.6
3
30.7
36.9
Minor BPS
59.5
0.38
1.8
79.56
42.7

Associated Gene:

Gene:
SLC35B1
Ensembl Gene ID:
ENSAPLG00000020918
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022303
4484444 - 4487224
2781