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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_4485419_4485692_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4485419 - 4485692
Intron Length:
274

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAACGCA
5'SS Class:
major
3'SS Sequence:
TTTGTTTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTCCAG
U12 Branch Point Sequence:
TTTGTTTTTACA
Flanking Amino Acid:
LFGLTSALGQSFIFMTVVYF
Intron Amino Acid Position:
101

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.3
0.69
1
68.4
36.8
Major BPS
53.4
0.08
1.7
72.5
43.5
Major PPT
92.3
0.95
0.7
87.5
30
Minor 5ss
36
-1.6
3.4
47.9
47.8
Minor BPS
60.3
0.32
1.7
74.12
37.8

Associated Gene:

Gene:
SLC35B1
Ensembl Gene ID:
ENSAPLG00000020918
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022303
4484444 - 4487224
2781