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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_4485847_4486171_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4485847 - 4486171
Intron Length:
325

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGTCTG
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTGAA
U12 Branch Point Sequence:
TGCTCCTGAATT
Flanking Amino Acid:
QWVGTVLVFLGLGLDAKFGK
Intron Amino Acid Position:
152

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.1
0.83
1
72.7
44.5
Major BPS
69.6
0.49
1
59.5
39
Major PPT
92.7
0.96
0.6
88.4
21.2
Minor 5ss
37.4
-1.4
3
42.1
44.4
Minor BPS
71.4
0.75
1.4
81.73
39.8

Associated Gene:

Gene:
SLC35B1
Ensembl Gene ID:
ENSAPLG00000020918
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022303
4484444 - 4487224
2781