Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_4510468_4514520_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

5UTR

Intron Coordinates:

4510468 - 4514520

Intron Length:

4053

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAATGGTT

5'SS Class:

strong_major

3'SS Sequence:

TGGGGACTTCCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TCTTTAT

U12 Branch Point Sequence:

GTCTCTTTATGG

Flanking Amino Acid:

5UTR

Intron Amino Acid Position:

5UTR

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.8

0.75

78.8

35.1

Major BPS

83.9

0.84

73.9

41.3

Major PPT

63.4

0.3

1.1

51.3

47.2

Minor 5ss

35.2

-1.7

3.8

55.5

48.6

Minor BPS

48.9

-0.2

55.3

46.3

Associated Gene:

Gene:

SPOP

Ensembl Gene ID:

ENSAPLG00000007134

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000007422

4510332 - 4526487

16156