Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_4514664_4514955_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

4514664 - 4514955

Intron Length:

292

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAGCCCG

5'SS Class:

strong_major

3'SS Sequence:

CCTCTGTTTTAAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTATTAT

U12 Branch Point Sequence:

TGGCCCTAAACT

Flanking Amino Acid:

PVAESWCYTQIKVVKFSYMW

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.1

0.85

0.9

66.3

45.2

Major BPS

72.4

0.56

1.1

63.7

42.3

Major PPT

0.47

74.2

34.3

Minor 5ss

38.2

-1.3

48.4

47.3

Minor BPS

64.4

0.53

1.7

78.35

43.5

Associated Gene:

Gene:

SPOP

Ensembl Gene ID:

ENSAPLG00000007134

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000029398

4514521 - 4527639

13119

ENSAPLT00000007422

4510332 - 4526487

16156