Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_4517010_4520491_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

4517010 - 4520491

Intron Length:

3482

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAAGTCTT

5'SS Class:

strong_major

3'SS Sequence:

TCATTCCACCCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTCAT

U12 Branch Point Sequence:

TTTTTTTTCATT

Flanking Amino Acid:

PDDKLTLFCEVSVVQDSVNI

Intron Amino Acid Position:

161

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

97.2

1.11

0.7

90.9

28.7

Major BPS

100

1.24

0.5

100

Major PPT

70.4

0.46

0.9

62.6

38.6

Minor 5ss

40.2

-1.1

3.1

58.6

45.9

Minor BPS

67.5

0.63

1.7

86.64

33.8

Associated Gene:

Gene:

SPOP

Ensembl Gene ID:

ENSAPLG00000007134

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000029398

4514521 - 4527639

13119

ENSAPLT00000007422

4510332 - 4526487

16156