Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_4520670_4521306_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

4520670 - 4521306

Intron Length:

637

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAGTATT

5'SS Class:

strong_major

3'SS Sequence:

CCCTCTGCTGTAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GTTTTAT

U12 Branch Point Sequence:

GCATCTCTAACC

Flanking Amino Acid:

EFQAHKAILAARSPVFSAMF

Intron Amino Acid Position:

220

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

100

1.18

0.6

100

Major BPS

78.7

0.71

1.2

71.7

44.6

Major PPT

70.2

0.46

0.8

64.8

30.8

Minor 5ss

41.7

-0.9

2.9

59.7

44.8

Minor BPS

57.9

0.23

1.7

64.69

40.7

Associated Gene:

Gene:

SPOP

Ensembl Gene ID:

ENSAPLG00000007134

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000029398

4514521 - 4527639

13119

ENSAPLT00000007422

4510332 - 4526487

16156