Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_4557043_4559757_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

4557043 - 4559757

Intron Length:

2715

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTGAGGCAG

5'SS Class:

strong_major

3'SS Sequence:

TCTTCTGTTGCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ATATCAT

U12 Branch Point Sequence:

GATGCTTGAATA

Flanking Amino Acid:

HSGEKPFRCENCDERFQYKY

Intron Amino Acid Position:

392

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.78

0.9

65.6

41.7

Major BPS

79.4

0.73

80.1

Major PPT

85.1

0.79

0.8

80.1

31.8

Minor 5ss

24.7

-2.9

28.6

43.8

Minor BPS

54.7

0.14

1.5

62.03

38.3

Associated Gene:

Gene:

ZNF652

Ensembl Gene ID:

ENSAPLG00000012036

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000033684

4550359 - 4564219

13861