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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_456828_489340_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
456828 - 489340
Intron Length:
32513

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGAGTT
5'SS Class:
strong_major
3'SS Sequence:
CTTCTTCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GCTTAAC
U12 Branch Point Sequence:
TCCCGCTTAACC
Flanking Amino Acid:
DEYLPIWGETEETTFEAGVK
Intron Amino Acid Position:
231

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.4
0.83
0.9
80.7
31.7
Major BPS
59.3
0.23
1.3
63.6
40.3
Major PPT
90
0.9
0.6
88.2
21.5
Minor 5ss
42.5
-0.8
3.5
64.3
47.2
Minor BPS
60.3
0.3
1.8
67.59
44.2

Associated Gene:

Gene:
ASIC2
Ensembl Gene ID:
ENSAPLG00000009431
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009829
401168 - 510023
108856