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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_4586106_4586811_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4586106 - 4586811
Intron Length:
706

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTCAGCATG
5'SS Class:
major
3'SS Sequence:
CTTCTGCCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTCAT
U12 Branch Point Sequence:
TGCTTGTCATGT
Flanking Amino Acid:
ILDDIGHGIKDHSTQLSRTG
Intron Amino Acid Position:
69

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.8
0.61
1.3
72.7
44.5
Major BPS
84.8
0.86
1.1
85.7
34.9
Major PPT
79.7
0.67
0.8
73.3
31.7
Minor 5ss
38.4
-1.3
2.9
48.8
47
Minor BPS
38
-0.8
2.4
55.8
46.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022532
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045510
4585459 - 4587015
1557