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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_4590901_4591265_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4590901 - 4591265
Intron Length:
365

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TCCTTCCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTGTAAC
U12 Branch Point Sequence:
TGTAACCCATGT
Flanking Amino Acid:
KKEVKNERQMVSKTGKEIKE
Intron Amino Acid Position:
29

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.8
0.89
0.8
88.7
25.1
Major BPS
62.2
0.3
1.2
65
38.7
Major PPT
85.7
0.8
0.7
80.4
24.9
Minor 5ss
36.4
-1.5
3
48.3
41.8
Minor BPS
36.2
-0.9
2.2
55.99
45.2

Associated Gene:

Gene:
GNGT2
Ensembl Gene ID:
ENSAPLG00000012604
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013118
4590817 - 4591391
575