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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_459590_461031_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
459590 - 461031
Intron Length:
1442

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACGTGCA
5'SS Class:
strong_major
3'SS Sequence:
CTCCCCTTTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAGTAAT
U12 Branch Point Sequence:
CTCCCCTTTACA
Flanking Amino Acid:
ALAIEWARTKRLLLVLALCP
Intron Amino Acid Position:
294

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.9
0.85
0.9
75.2
34.9
Major BPS
67.8
0.44
1.1
67.7
36.5
Major PPT
81.5
0.71
0.7
75.1
27
Minor 5ss
31.9
-2.1
3.3
41.7
44.9
Minor BPS
62.1
0.37
1.7
68.9
43.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030201
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024274
433776 - 461910
28135