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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_4605523_4605652_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4605523 - 4605652
Intron Length:
130

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGC|GTGAGTGCA
5'SS Class:
major
3'SS Sequence:
CTCTCACCCTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CATTTAT
U12 Branch Point Sequence:
TCTCCTCTCACC
Flanking Amino Acid:
AYENDVAAMSLQSHLIPGLN
Intron Amino Acid Position:
315

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
64.8
0.35
1.3
62
38.8
Major BPS
76.3
0.65
1
67.3
39.3
Major PPT
73.3
0.52
0.8
69.9
29.7
Minor 5ss
28.5
-2.5
3
28
36.3
Minor BPS
48.3
-0.1
2.1
64.24
41.6

Associated Gene:

Gene:
IGF2BP1
Ensembl Gene ID:
ENSAPLG00000012620
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043398
4602291 - 4631735
29445
ENSAPLT00000024335
4602291 - 4631735
29445
ENSAPLT00000013209
4603320 - 4631273
27954