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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_4606412_4607530_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4606412 - 4607530
Intron Length:
1119

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTGAGTCTG
5'SS Class:
strong_major
3'SS Sequence:
TTCCTCTCTCAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTCTTTTTCATT
Flanking Amino Acid:
IRNITKQTQSKADEVPLKIL
Intron Amino Acid Position:
228

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.3
0.71
0.9
71.6
40.2
Major BPS
100
1.24
0.5
100
0
Major PPT
73.2
0.52
1
71.6
33.2
Minor 5ss
34.1
-1.8
3
41.6
39
Minor BPS
60.5
0.41
1.7
78.3
39.3

Associated Gene:

Gene:
IGF2BP1
Ensembl Gene ID:
ENSAPLG00000012620
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013209
4603320 - 4631273
27954