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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_4607813_4609572_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4607813 - 4609572
Intron Length:
1760

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCA|GTAAGTGCC
5'SS Class:
major
3'SS Sequence:
GCTTGTCTTCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CATCCAC
U12 Branch Point Sequence:
ACCACCCCAACC
Flanking Amino Acid:
VTYANREQTRQAIMKLNGHQ
Intron Amino Acid Position:
134

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.6
0.6
1
68.5
38.3
Major BPS
48.9
-0
1.2
59.8
36.5
Major PPT
78.9
0.65
0.9
69.2
41.8
Minor 5ss
36.1
-1.6
3.2
50.7
39.7
Minor BPS
46.4
-0.2
1.9
54.69
42.9

Associated Gene:

Gene:
IGF2BP1
Ensembl Gene ID:
ENSAPLG00000012620
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024335
4602291 - 4631735
29445
ENSAPLT00000013209
4603320 - 4631273
27954
ENSAPLT00000043398
4602291 - 4631735
29445