About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_4630057_4631098_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4630057 - 4631098
Intron Length:
1042

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTAAGCGGC
5'SS Class:
major
3'SS Sequence:
ATTTTGTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATAAA
U12 Branch Point Sequence:
ATTATAAAAACC
Flanking Amino Acid:
WAMKAIETFSGKVELHGKQL
Intron Amino Acid Position:
59

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.9
0.66
1.1
62
44
Major BPS
78.6
0.71
1
78.6
31
Major PPT
83.4
0.75
0.8
81.7
35.4
Minor 5ss
36.2
-1.6
3.3
41.6
45.3
Minor BPS
43.6
-0.5
2.1
59.51
39

Associated Gene:

Gene:
IGF2BP1
Ensembl Gene ID:
ENSAPLG00000012620
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043398
4602291 - 4631735
29445
ENSAPLT00000024335
4602291 - 4631735
29445
ENSAPLT00000013209
4603320 - 4631273
27954