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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_4647203_4649224_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
4647203 - 4649224
Intron Length:
2022

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAAGC
5'SS Class:
strong_major
3'SS Sequence:
TTATGTATCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACTTAT
U12 Branch Point Sequence:
CTGTCATTCACT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.9
0.96
0.8
79
35.3
Major BPS
71.3
0.53
1
61.3
37
Major PPT
74.8
0.56
1
66.5
43.8
Minor 5ss
33.8
-1.8
2.9
43.7
43.6
Minor BPS
56.8
0.29
2.1
76.77
45.6

Associated Gene:

Gene:
GIP
Ensembl Gene ID:
ENSAPLG00000013204
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031206
4647017 - 4655089
8073