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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_4662133_4662551_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4662133 - 4662551
Intron Length:
419

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTACGTATG
5'SS Class:
major
3'SS Sequence:
TCCGTTTCAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTTAC
U12 Branch Point Sequence:
TTTTACTCAGTT
Flanking Amino Acid:
WEMERAKQILEHLLKEGMAW
Intron Amino Acid Position:
179

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80
0.71
1
74.7
41.5
Major BPS
68.8
0.47
1.2
63.4
44
Major PPT
73.3
0.52
0.9
69
35.9
Minor 5ss
38.4
-1.3
3
47.6
42.5
Minor BPS
56.6
0.29
2
81.59
40

Associated Gene:

Gene:
SNF8
Ensembl Gene ID:
ENSAPLG00000031118
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017965
4658311 - 4662808
4498