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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_4670049_4671938_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4670049 - 4671938
Intron Length:
1890

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGAAGA
5'SS Class:
strong_major
3'SS Sequence:
TTTGATGCCTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
GTGTTGTTAATT
Flanking Amino Acid:
RNGKVCLSILGTWTGPAWSP
Intron Amino Acid Position:
197

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
1
71.7
40.1
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
73
0.52
1
69.8
41.2
Minor 5ss
32.4
-2
2.9
32.3
42
Minor BPS
58.3
0.34
2.1
75.75
41.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013301
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013852
4664633 - 4675967
11335