Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_4670049_4673929_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

4670049 - 4673929

Intron Length:

3881

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAGAGAA

5'SS Class:

strong_major

3'SS Sequence:

TTTGATGCCTCAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTGAT

U12 Branch Point Sequence:

GTGTTGTTAATT

Flanking Amino Acid:

VVPDPHDMTKHLDRARMEPS

Intron Amino Acid Position:

479

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

91.4

0.98

0.8

80.4

26.8

Major BPS

96.4

1.15

0.6

85.7

34.9

Major PPT

0.52

69.8

41.2

Minor 5ss

29.7

-2.3

3.3

37.8

Minor BPS

58.3

0.34

2.1

75.75

41.6

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000013301

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000024207

4669971 - 4680447

10477