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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_4672127_4673929_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4672127 - 4673929
Intron Length:
1803

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAGAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
TGGTGCGCAAGA
Flanking Amino Acid:
VVPDPHDMTKIHALITGPFD
Intron Amino Acid Position:
135

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.4
0.98
0.8
80.4
26.8
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
91.8
0.94
0.7
84.6
36
Minor 5ss
29.7
-2.3
3.3
37.8
47
Minor BPS
38.5
-0.8
2.5
51.79
46

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013301
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013852
4664633 - 4675967
11335