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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_4674003_4675638_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4674003 - 4675638
Intron Length:
1636

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTGAGAGCC
5'SS Class:
major
3'SS Sequence:
TTCCTTTGTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GACTAAT
U12 Branch Point Sequence:
AGATCCTGACTA
Flanking Amino Acid:
PSPACLLRIKRDIMSIYKEP
Intron Amino Acid Position:
110

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.6
0.63
1
63.4
35.3
Major BPS
69
0.47
1.2
69.9
35.3
Major PPT
84.2
0.77
0.8
83.8
31.2
Minor 5ss
26.7
-2.7
3.2
34.9
41.1
Minor BPS
50.6
0.01
1.7
60.61
39.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013301
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013852
4664633 - 4675967
11335