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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_4715862_4716288_R

Intron Information:

Intron Rank:
130972
Intron Class:
major
Intron Phase:
Intron Coordinates:
4715862 - 4716288
Intron Length:
427

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCAGAACG
5'SS Class:
major
3'SS Sequence:
TTTATTTTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
CATATTTTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.7
0.61
1.3
69
41.8
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
91.7
0.94
0.7
84.7
35.8
Minor 5ss
29.2
-2.4
2.6
33
41.5
Minor BPS
49.9
0.07
1.6
64.72
40.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017690
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041414
4715611 - 4718628
3018