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Intron Name: Anas_platyrhynchos_platyrhynchos_28_4768139_4771640_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

4768139 - 4771640

Intron Length:

3502

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAA|GTAAGTTAT

5'SS Class:

strong_major

3'SS Sequence:

GCTTTTCTTTCAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TATTGAT

U12 Branch Point Sequence:

TCGTATTGATCT

Flanking Amino Acid:

GSEDKDRTDQTNPAASWLHA

Intron Amino Acid Position:

170

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

87.8

0.89

0.8

86.8

22.8

Major BPS

88.6

0.96

0.8

77.7

37.1

Major PPT

0.83

0.7

84.6

30.3

Minor 5ss

43.6

-0.7

2.9

58.5

40.4

Minor BPS

47.3

-0.1

1.9

65.35

45.2

Associated Gene:

Gene:

HOXB9

Ensembl Gene ID:

ENSAPLG00000013604

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000014169

4767631 - 4772876

5246