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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_4781000_4781841_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4781000 - 4781841
Intron Length:
842

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGCGA
5'SS Class:
strong_major
3'SS Sequence:
TGCAATTCCCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTCCAT
U12 Branch Point Sequence:
TTCCATCCAACC
Flanking Amino Acid:
TQLFPWMRPQAAAGRRRGRQ
Intron Amino Acid Position:
141

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
65.7
41.7
Major BPS
77.3
0.68
1.2
86.7
32.3
Major PPT
67.4
0.39
1
57.8
42.8
Minor 5ss
24.7
-2.9
3
29.8
43.1
Minor BPS
44.2
-0.4
1.9
57.96
40.5

Associated Gene:

Gene:
HOXB8
Ensembl Gene ID:
ENSAPLG00000013614
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014174
4780579 - 4783029
2451