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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_4783328_4784591_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
5UTR
Intron Coordinates:
4783328 - 4784591
Intron Length:
1264

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATGTGT
5'SS Class:
major
3'SS Sequence:
ATAAATCCAGCAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TATTTTATAAAT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.71
1
72.3
39.7
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
59.7
0.22
1
53.1
41.5
Minor 5ss
38.5
-1.3
3.4
56.5
47.6
Minor BPS
59.7
0.38
1.7
79.08
36.5

Associated Gene:

Gene:
HOXB7
Ensembl Gene ID:
ENSAPLG00000013643
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014209
4783296 - 4788459
5164